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100 item limit per Category
If you have a big inventory and each Category contains more than 100 items, then it is required that you create additional categories and place the items in those additional categories. Clover allows up to 100 items per category to be imported and shown on the website.

Solution: Go to the inventory App on your Clover POS or Clover.com and create more categories. Once you create more categories, then distribute the items so each category has less than 100 items.

Once you do that, then perform manual sync along with a clean inventory as seen in this video below: